Data Analysis of ChipSeq
Description
Immerse yourself in the powerful world of Chromatin Immunoprecipitation sequencing (ChIP-seq) with our hands-on workshop tailored for researchers, bioinformaticians, and data scientists eager to master this transformative technology. ChIP-seq has revolutionized our understanding of protein-DNA interactions, offering unprecedented insights into gene regulation, chromatin structure, and epigenetic modifications at a genome-wide scale.
In this workshop, you will explore the fundamentals and advanced techniques of ChIP-seq analysis, from experimental design and data preprocessing to peak calling, differential binding analysis, and functional interpretation. Through guided tutorials and practical exercises, you’ll develop the skills necessary to analyze and interpret ChIP-seq data using popular tools like MACS2 as well as R/Bioconductor packages.
Key Highlights:
- Introduction to ChIP-seq: Grasp the principles, applications, and experimental considerations of ChIP-seq technology.
- Data Processing & QC: Learn to preprocess raw sequencing data and perform rigorous quality control assessments.
- Peak Calling & Visualization: Master techniques for identifying binding sites and visualizing genomic data with tools like IGV.
- Differential Binding Analysis: Uncover key differences in protein binding or histone modifications between conditions.
- Functional Analysis: Explore motif discovery, pathway enrichment, and integration with other genomic data types.
- Interactive Sessions: Apply your knowledge in real-time through hands-on exercises and real-world case studies.
Who Should Attend:
This workshop is ideal for molecular biologists, geneticists, bioinformaticians, computational biologists, and anyone interested in gene regulation, epigenetics, and genomic data analysis.
Unlock the power of ChIP-seq to reveal the intricacies of transcription factor binding, histone modifications, and chromatin accessibility. Join us for this comprehensive workshop and elevate your genomic data analysis skills to new heights!
Organizer
Dr. Amir Hussain is a distinguished Senior Bioprocess/Biochemical Engineer with over a decade of experience in biotechnology, bioprocess engineering, and microbiology. His career is marked by significant contributions to both research and academia, with a strong focus on enzyme and cell cultivation, biotransformation, and fermentation. Dr. Hussain’s expertise extends to advanced training in upstream and downstream processes, where he has successfully guided undergraduate and graduate students through complex biotechnological applications. Dr. Hussain’s educational background includes a Ph.D. in Biochemical Engineering from Jacobs University Bremen and a Master’s degree in Agricultural Sciences from Faisalabad Agriculture University, Pakistan. His extensive skill set, combined with his practical experience in both academic and industrial settings, makes him a leader in the field of biotechnology and a sought-after trainer in bioprocess development.
Dr. Amir Hussain is a recognized innovator in the field of bioprocess engineering, with a proven track record of advancing the industry through his research and academic contributions. He has authored eight scientific publications and successfully managed a European Union project with a €250,000 lab grant. Dr. Hussain’s work demonstrates a deep understanding of current industry trends, coupled with a strong commitment to driving innovation in bioprocess development and biotechnology.
Currently based in Bremen, Germany, Dr. Hussain serves as a Senior Bioprocess Development Scientist at Green Biotec UG. In this role, he manages multifaceted projects that include genetic and cell line engineering, bioreactor design, and process optimization. His research has been integral to European Union-funded projects, where he developed innovative bioprocess solutions, particularly in the scale-up and transfer of microbial and mammalian cell cultivation. His work is widely recognized, with multiple scientific publications and a substantial grant under his belt.
Dr. Rehan Zafar Paracha is a renowned interdisciplinary scientist and academic, currently serving as a Tenured Associate Professor at the School of Interdisciplinary Engineering & Sciences (SINES) at the National University of Sciences and Technology (NUST), Islamabad. With a rich and diverse background in bioinformatics, computational chemistry, systems biology, and automation, Dr. Paracha exemplifies the modern interdisciplinary approach to scientific research and education. His academic journey, which includes a PhD in Applied Biosciences from NUST, has been marked by a commitment to integrating computational sciences with biological research, aiming to bridge the gap between theoretical models and practical applications.
Dr. Paracha’s work is at the cutting edge of several disciplines, focusing on complex areas such as the pathophysiology of sepsis, drug and vaccine design, and the automation of computational processes. His research has led to the development of innovative tools and automated systems that have significantly advanced the fields of computational biology and bioinformatics. As a leading figure in these interdisciplinary domains, he has not only contributed to the scientific community through his prolific publication record in high-impact journals but has also been instrumental in mentoring the next generation of scientists, supervising numerous master’s and doctoral students.
His achievements in the integration of computational sciences with automation in biological research have earned him national recognition, including the prestigious Best Research Paper Award by the Higher Education Commission of Pakistan. Dr. Paracha’s work embodies the future of scientific research, where interdisciplinary collaboration and the use of advanced computational tools are essential for solving complex global challenges.